To set the options via a config files, simply create an empty text file (using your favorite text editor) and set the options, one per line. It simply parses each line and tries to set the first word (non-whitespace chunk of characters) to the value immediately following it on the rest of the line. If the first character of the line is a ‘#’ or the entire line is blank, then the entire line is treated as a comment and is ignored.
The -c option may be used on the command line to tell Rapture to load a configuration file:
$ rapture -c <config file>
or alternately, each option can be specified on the command line
$ rapture -<option> <value>...
Either way, the only option that absolutely must be set is the Executable option. This must point to the executable that needs to be run when ready to do so. Without it, Rapture has nothing to do and simply quits immediately (well technically it looks for a default of rapture.out but nobody uses that).